Package: rwty
Type: Package
Title: R We There Yet? Visualizing MCMC Convergence in Phylogenetics
Version: 1.0.3
Authors@R: c(person(given = "Dan", family = "Warren", role = c("aut", "cre"), email = "dan.l.warren@gmail.com"),
              person(given = "Anthony", family = "Geneva", role = "aut", email = "anthony.geneva@gmail.com"),
              person(given = "Rob", family = "Lanfear", role = "aut", email = "rob.lanfear@gmail.com"),
              person(given = "Luke", family = "Harmon", role = "ctb"),
              person(given = "April", family = "Wright", role = "ctb"),
              person(given = "Diego", family = "Mallo", role = "ctb"),
              person(given = "Klaus", family = "Schliep", role = "ctb"),
              person(given = "Kelly", family = "Luke", role = "ctb"),
              person(given = "Kendall", family = "Michelle", role = "ctb"),
              person(given = "Smith", family = "Martin", role = "ctb")
              )
Description: Implements various tests, visualizations, and metrics for
        diagnosing convergence of MCMC chains in phylogenetics.  It
        implements and automates many of the functions of the AWTY
        package in the R environment, as well as a host of other
        functions.  Warren, Geneva, and Lanfear (2017),
        <doi:10.1093/molbev/msw279>.
License: GPL-2
Depends: R (>= 3.3.0), ape, ggplot2,
Imports: reshape2, phangorn, coda, viridis, grid, plyr, ggdendro,
        GGally, parallel, TreeDist
Suggests: knitr, testthat, markdown, rmarkdown, stringi
Encoding: UTF-8
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://danlwarren.r-universe.dev
Date/Publication: 2025-03-27 01:04:22 UTC
RemoteUrl: https://github.com/danlwarren/rwty
RemoteRef: HEAD
RemoteSha: a72560d561e2b6569eb8ceae9d4c33f9d76786d4
NeedsCompilation: no
Packaged: 2026-06-23 07:35:16 UTC; root
Author: Dan Warren [aut, cre],
  Anthony Geneva [aut],
  Rob Lanfear [aut],
  Luke Harmon [ctb],
  April Wright [ctb],
  Diego Mallo [ctb],
  Klaus Schliep [ctb],
  Kelly Luke [ctb],
  Kendall Michelle [ctb],
  Smith Martin [ctb]
Maintainer: Dan Warren <dan.l.warren@gmail.com>